Distinct genetic signatures can help distinguish responders from nonresponders of chimeric antigen receptor (CAR) T-cell treatment in patients diagnosed with chronic lymphocytic leukemia (CLL).
Immunotherapy presents great promise as an anticancer therapy. While checkpoint inhibitors, such as nivolumab, pembrolizumab, and atezolizumab, continue to improve outcomes in several different tumor types, their limitation is the small number of patients who actually show a robust response to the drugs. A more personalized approach is the use of modified chimeric antigen receptor (CAR) T-cells, where the patient’s own blood cells are modified to generate a more robust immune response against cancer cells.  Â
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At the 58th American Society of Hematology Annual Meeting & Exposition, being held December 3-6, 2016, in San Diego, California, Jan Joseph Melenhorst, PhD, presented results of a study evaluating biomarkers of response to anti-CD19 CAR T treatment in patients diagnosed with chronic lymphocytic leukemia (CLL). For this study, Melenhorst, adjunct associate professor of pathology and laboratory medicine, Center for Cellular Immunotherapies, Perelman School of Medicine at the University of Pennsylvania, collaborated with David L. Porter, MD, and Carl June, MD, who are pioneers in CAR T research.
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“While targeted therapies have shown remarkable activity in CLL, they are not curative,” Melenhorst said. Stating that both extrinsic and intrinsic factors could influence CAR T dysfunction in CLL, Melenhorst said that their group aimed to identify biomarkers in pre-manufacturing T cells and in the final product following expansion ex-vivo.
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The adoptive transfer of CTL019–formerly CART-19 cells–has shown remarkable activity and is known to induce long-term remissions in a subset of patients with relapsed/refractory CLL, who typically have a poor prognosis. However, very little is known about predictive indicators of efficacy with this treatment. The authors designed the present study to evaluate biomarkers of clinical response to CTL019 in CLL.
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The study recruited 41 patients with advanced, heavily pre-treated and high-risk CLL who received at least 1 dose of CTL019 cells. In vivo expansion and persistence were key quality attributes of CTL019 cells in CLL patients who have complete responses to therapy, according to the authors. Melenhorst showed that responses were sustained beyond 5 years in 2 patients, accompanied by the persistence of functional CTL019 cells. The authors also identified transcriptomic signatures of early memory T cells that were associated with durable remissions, while T cells from nonresponding patients had higher expression of genes that regulate terminal differentiation and exhaustion.
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“We saw a dramatically different proliferation potential of T cells in responders vs nonresponders,” Melenhorst said. "In vitro proliferation correlated significantly with in vivo expansion, indicating that an intrinsic factor was associated with the proliferative capacity of these cells.”
He added that transcriptional profile by cluster analysis indicated very distinct signatures, particularly with respect to early memory cells and exhaustion signature. T cells from nonresponders  were enriched in genes belonging to known pathways of exhaustion. Additionally, early lineage T cells, Melenhorst showed, may mediate superior anti-tumor activity due to enhanced proliferation and survival following adoptive transfer.
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Infused CAR T-cells in nonresponders also had reduced CD27 expression. “The combined assessment of PD1 and CD27 expression on CD8+ CTL019 cells in the infusion product accurately predicted response to treatment,” Melenhorst said. He added that immune checkpoint inhibitor-directed combination therapy may reinvigorate CTL109 cells.
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“Our gene analysis also showed the involvement of the STAT3 pathway,” he stated, showing that CTL019 cells from complete responders secreted significantly higher levels of several cytokines, including CCL20, IL-21, IL-22, IL-17, and IL-6, indicating that the STAT3 signaling pathway may play a very important role in stimulating the enhanced potency of CTL019 cells.
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“These data and additional immunological biomarkers may be used to identify which patients are most likely to respond to adoptive transfer strategies, leading to an enhanced personalized approach to cellular therapy,” Melenhorst concluded.
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Reference
Fraietta JA, Lacey SF, Wilcox NS, et al. Biomarkers of response to anti-CD19 chimeric antigen receptor (CAR) T-cell therapy in patients with chronic lymphocytic leukemia. Presented at the 58th American Society of Hematology Annual Meeting & Exposition, San Diego, California, December 3, 2016. Abstract 57.Â
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